IL_8YOP_136
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8YOP|1|L5|G|4084, 8YOP|1|L5|C|4162, 8YOP|1|L5|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_136 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.209
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8YOP|1|L5|G|4082
8YOP|1|L5|U|4083
8YOP|1|L5|G|4084
8YOP|1|L5|A|4085
8YOP|1|L5|G|4086
8YOP|1|L5|G|4087
8YOP|1|L5|C|4088
*
8YOP|1|L5|G|4161
8YOP|1|L5|C|4162
8YOP|1|L5|U|4163
8YOP|1|L5|C|4164
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
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