IL_8YOP_217

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8YOP|1|S2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|S2|G|535
8YOP|1|S2|A|536
8YOP|1|S2|C|537
*
8YOP|1|S2|G|546
8YOP|1|S2|G|547
8YOP|1|S2|C|548
8YOP|1|S2|C|549

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30