IL_8YOP_218
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_218 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1403
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8YOP|1|S2|G|563
8YOP|1|S2|A|564
8YOP|1|S2|G|565
*
8YOP|1|S2|C|585
8YOP|1|S2|G|586
8YOP|1|S2|A|587
8YOP|1|S2|G|588
8YOP|1|S2|G|589
8YOP|1|S2|A|590
8YOP|1|S2|U|591
8YOP|1|S2|C|592
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
Coloring options: