IL_8YOP_281

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCCCGC*GCGGAGCG

Length

14 nucleotides

Bulged bases

8YOP|1|S2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|S2|C|1750
8YOP|1|S2|C|1751
8YOP|1|S2|C|1752
8YOP|1|S2|C|1753
8YOP|1|S2|G|1754
8YOP|1|S2|C|1755
*
8YOP|1|S2|G|1777
8YOP|1|S2|C|1778
8YOP|1|S2|G|1779
8YOP|1|S2|G|1780
8YOP|1|S2|A|1781
8YOP|1|S2|G|1782
8YOP|1|S2|C|1783
8YOP|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6