IL_8YP6_019

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

8YP6|1|a|U|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.3892

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8YP6|1|a|G|409
8YP6|1|a|G|410
8YP6|1|a|A|411
8YP6|1|a|U|412
8YP6|1|a|G|413
8YP6|1|a|A|414
8YP6|1|a|C|415
8YP6|1|a|G|416
*
8YP6|1|a|U|427
8YP6|1|a|G|428
8YP6|1|a|U|429
8YP6|1|a|A|430
8YP6|1|a|A|431
8YP6|1|a|A|432
8YP6|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4