IL_8YP6_025

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_025 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.12

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8YP6|1|a|C|549
8YP6|1|a|G|550
8YP6|1|a|U|551
8YP6|1|a|A|552
8YP6|1|a|A|553
8YP6|1|a|A|554
8YP6|1|a|G|555
*
8YP6|1|a|C|862
8YP6|1|a|G|863

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5

Chain l

Small ribosomal subunit protein uS12

Chain q

Small ribosomal subunit protein uS17