IL_8YP6_030

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_030 not in the Motif Atlas

Geometric match to IL_5J7L_031

Geometric discrepancy: 0.1049

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8YP6|1|a|G|634
8YP6|1|a|A|635
*
8YP6|1|a|U|731
8YP6|1|a|G|732
8YP6|1|a|A|733
8YP6|1|a|C|734

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain o

Small ribosomal subunit protein uS15