IL_8YP6_038

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GACGGG*UUGUAC

Length

12 nucleotides

Bulged bases

8YP6|1|a|G|908, 8YP6|1|a|U|1376, 8YP6|1|a|A|1377

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YP6|1|a|G|904
8YP6|1|a|A|905
8YP6|1|a|C|906
8YP6|1|a|G|907
8YP6|1|a|G|908
8YP6|1|a|G|909
*
8YP6|1|a|U|1373
8YP6|1|a|U|1374
8YP6|1|a|G|1375
8YP6|1|a|U|1376
8YP6|1|a|A|1377
8YP6|1|a|C|1378

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5