IL_8YP6_039

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8YP6|1|a|A|1208

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_039 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3366

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

8YP6|1|a|G|935
8YP6|1|a|G|936
*
8YP6|1|a|C|1207
8YP6|1|a|A|1208
8YP6|1|a|C|1209

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Methionine aminopeptidase

Chain i

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10

Chain m

Small ribosomal subunit protein uS13

Chain s

Small ribosomal subunit protein uS19