IL_8YP6_045

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_045 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.3121

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8YP6|1|a|G|1041
8YP6|1|a|U|1042
8YP6|1|a|C|1043
*
8YP6|1|a|G|1174
8YP6|1|a|U|1175
8YP6|1|a|C|1176

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain e

Small ribosomal subunit protein uS5

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14B