3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
8YUO|1|a|A|504, 8YUO|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUO_076 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0748
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

8YUO|1|a|G|481
8YUO|1|a|A|482
8YUO|1|a|A|483
8YUO|1|a|C|484
*
8YUO|1|a|G|496
8YUO|1|a|A|497
8YUO|1|a|G|498
8YUO|1|a|U|499
8YUO|1|a|G|500
8YUO|1|a|A|501
8YUO|1|a|A|502
8YUO|1|a|A|503
8YUO|1|a|A|504
8YUO|1|a|A|505
8YUO|1|a|G|506
8YUO|1|a|A|507
8YUO|1|a|A|508
8YUO|1|a|C|509

Current chains

Chain a
23S rRNA

Nearby chains

Chain r
50S ribosomal protein L22
Chain t
50S ribosomal protein L24

Coloring options:


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