IL_8YUO_096

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

8YUO|1|a|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUO_096 not in the Motif Atlas

Geometric match to IL_8VTW_082

Geometric discrepancy: 0.2786

The information below is about IL_8VTW_082

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8YUO|1|a|G|880
8YUO|1|a|G|881
8YUO|1|a|G|882
*
8YUO|1|a|U|894
8YUO|1|a|U|895
8YUO|1|a|A|896
8YUO|1|a|C|897

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

Transfer RNA; tRNA