3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8YUO|1|a|A|1127, 8YUO|1|a|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUO_102 not in the Motif Atlas
Homologous match to IL_5J7L_281
Geometric discrepancy: 0.0691
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8YUO|1|a|G|1024
8YUO|1|a|G|1025
8YUO|1|a|G|1026
8YUO|1|a|A|1027
8YUO|1|a|A|1028
8YUO|1|a|A|1029
8YUO|1|a|C|1030
*
8YUO|1|a|G|1124
8YUO|1|a|G|1125
8YUO|1|a|A|1126
8YUO|1|a|A|1127
8YUO|1|a|G|1128
8YUO|1|a|A|1129
8YUO|1|a|U|1130
8YUO|1|a|G|1131
8YUO|1|a|U|1132
8YUO|1|a|A|1133
8YUO|1|a|A|1134
8YUO|1|a|C|1135
8YUO|1|a|G|1136
8YUO|1|a|G|1137
8YUO|1|a|G|1138
8YUO|1|a|G|1139
8YUO|1|a|C|1140

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain d
50S ribosomal protein L3
Chain i
50S ribosomal protein L13
Chain l
50S ribosomal protein L16

Coloring options:


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