IL_8YUP_019
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YUP_019 not in the Motif Atlas
- Homologous match to IL_5J7L_020
- Geometric discrepancy: 0.096
- The information below is about IL_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.3
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YUP|1|A|U|409
8YUP|1|A|G|410
8YUP|1|A|A|411
8YUP|1|A|A|412
8YUP|1|A|G|413
8YUP|1|A|A|414
8YUP|1|A|A|415
8YUP|1|A|G|416
*
8YUP|1|A|U|427
8YUP|1|A|G|428
8YUP|1|A|U|429
8YUP|1|A|A|430
8YUP|1|A|A|431
8YUP|1|A|A|432
8YUP|1|A|G|433
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
Coloring options: