IL_8YUP_025

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8YUP|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUP_025 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0694

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8YUP|1|A|C|569
8YUP|1|A|G|570
8YUP|1|A|U|571
8YUP|1|A|A|572
8YUP|1|A|A|573
8YUP|1|A|A|574
8YUP|1|A|G|575
*
8YUP|1|A|C|880
8YUP|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17