IL_8YUP_054
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- CGACC*GCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YUP_054 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.1063
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8YUP|1|A|C|1259
8YUP|1|A|G|1260
8YUP|1|A|A|1261
8YUP|1|A|C|1262
8YUP|1|A|C|1263
*
8YUP|1|A|G|1272
8YUP|1|A|C|1273
8YUP|1|A|A|1274
8YUP|1|A|A|1275
8YUP|1|A|G|1276
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
Coloring options: