IL_8YUP_073

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUP_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4245

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8YUP|1|a|C|274
8YUP|1|a|C|275
8YUP|1|a|U|276
8YUP|1|a|G|277
8YUP|1|a|A|278
8YUP|1|a|A|279
8YUP|1|a|U|280
8YUP|1|a|C|281
*
8YUP|1|a|G|359
8YUP|1|a|U|360
8YUP|1|a|G|361
8YUP|1|a|A|362
8YUP|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains