IL_8YUP_104

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

8YUP|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YUP|1|a|C|1043
8YUP|1|a|C|1044
8YUP|1|a|C|1045
8YUP|1|a|A|1046
8YUP|1|a|G|1047
8YUP|1|a|A|1048
8YUP|1|a|C|1049
8YUP|1|a|A|1050
8YUP|1|a|G|1051
8YUP|1|a|C|1052
*
8YUP|1|a|G|1107
8YUP|1|a|U|1108
8YUP|1|a|C|1109
8YUP|1|a|G|1110
8YUP|1|a|A|1111
8YUP|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6