IL_8YUP_129

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8YUP|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUP_129 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1654

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YUP|1|a|U|1712
8YUP|1|a|A|1713
8YUP|1|a|U|1714
8YUP|1|a|G|1715
8YUP|1|a|U|1716
8YUP|1|a|A|1717
8YUP|1|a|G|1718
*
8YUP|1|a|U|1742
8YUP|1|a|G|1743
8YUP|1|a|A|1744
8YUP|1|a|A|1745
8YUP|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains