IL_8YUQ_025

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8YUQ|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUQ_025 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0716

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8YUQ|1|A|C|569
8YUQ|1|A|G|570
8YUQ|1|A|U|571
8YUQ|1|A|A|572
8YUQ|1|A|A|573
8YUQ|1|A|A|574
8YUQ|1|A|G|575
*
8YUQ|1|A|C|880
8YUQ|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17