3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
8YUQ|1|A|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUQ_039 not in the Motif Atlas
Homologous match to IL_5J7L_040
Geometric discrepancy: 0.0685
The information below is about IL_5J7L_040
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

8YUQ|1|A|G|925
8YUQ|1|A|G|926
8YUQ|1|A|G|927
*
8YUQ|1|A|U|1390
8YUQ|1|A|U|1391

Current chains

Chain A
16S rRNA

Nearby chains

Chain W
mRNA

Coloring options:


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