3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUQ_079 not in the Motif Atlas
Homologous match to IL_5J7L_259
Geometric discrepancy: 0.0667
The information below is about IL_5J7L_259
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8YUQ|1|a|C|672
8YUQ|1|a|C|673
8YUQ|1|a|G|674
*
8YUQ|1|a|C|806
8YUQ|1|a|U|807
8YUQ|1|a|G|808

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain k
50S ribosomal protein L15

Coloring options:


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