IL_8YUQ_117

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

8YUQ|1|a|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUQ_117 not in the Motif Atlas

Homologous match to IL_5J7L_298

Geometric discrepancy: 0.1142

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8YUQ|1|a|G|1450
8YUQ|1|a|C|1451
*
8YUQ|1|a|G|1459
8YUQ|1|a|U|1460
8YUQ|1|a|C|1461

Current chains

Chain a

23S rRNA

Nearby chains