IL_8YUQ_129

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8YUQ|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUQ_129 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1348

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YUQ|1|a|U|1712
8YUQ|1|a|A|1713
8YUQ|1|a|U|1714
8YUQ|1|a|G|1715
8YUQ|1|a|U|1716
8YUQ|1|a|A|1717
8YUQ|1|a|G|1718
*
8YUQ|1|a|U|1742
8YUQ|1|a|G|1743
8YUQ|1|a|A|1744
8YUQ|1|a|A|1745
8YUQ|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains