IL_8YUQ_154

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

8YUQ|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUQ_154 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1571

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8YUQ|1|a|A|2459
8YUQ|1|a|U|2460
8YUQ|1|a|A|2461
*
8YUQ|1|a|U|2489
8YUQ|1|a|G|2490
8YUQ|1|a|U|2491
8YUQ|1|a|U|2492
8YUQ|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16