IL_8YUR_021

3D structure

PDB id

8YUR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8YUR|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUR_021 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.2244

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YUR|1|A|G|446
8YUR|1|A|G|447
8YUR|1|A|A|448
8YUR|1|A|G|449
8YUR|1|A|G|450
*
8YUR|1|A|C|483
8YUR|1|A|G|484
8YUR|1|A|U|485
8YUR|1|A|U|486
8YUR|1|A|A|487
8YUR|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16