3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUA*UUUUC
Length
8 nucleotides
Bulged bases
8Z70|1|2|U|260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_014 not in the Motif Atlas
Homologous match to IL_8P9A_386
Geometric discrepancy: 0.474
The information below is about IL_8P9A_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_51387.3
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
21

Unit IDs

8Z70|1|2|G|204
8Z70|1|2|U|205
8Z70|1|2|A|206
*
8Z70|1|2|U|259
8Z70|1|2|U|260
8Z70|1|2|U|261
8Z70|1|2|U|262
8Z70|1|2|C|263

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SS
Small ribosomal subunit protein eS4A
Chain SV
Small ribosomal subunit protein eS8A

Coloring options:


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