IL_8Z70_021

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8Z70|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_021 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.1429

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8Z70|1|2|G|363
8Z70|1|2|G|364
8Z70|1|2|G|365
*
8Z70|1|2|C|376
8Z70|1|2|G|377
8Z70|1|2|A|378
8Z70|1|2|U|379
8Z70|1|2|U|380
8Z70|1|2|C|381

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A