IL_8Z70_023

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*AAGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_023 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.2831

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8Z70|1|2|C|411
8Z70|1|2|A|412
8Z70|1|2|U|413
*
8Z70|1|2|A|420
8Z70|1|2|A|421
8Z70|1|2|G|422
8Z70|1|2|G|423

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain X

Large ribosomal subunit protein uL14A

Chain s

Transfer RNA; tRNA