IL_8Z70_024
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- 8Z70|1|2|U|440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z70_024 not in the Motif Atlas
- Homologous match to IL_8P9A_396
- Geometric discrepancy: 0.1837
- The information below is about IL_8P9A_396
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
8Z70|1|2|U|439
8Z70|1|2|U|440
8Z70|1|2|A|441
*
8Z70|1|2|U|463
8Z70|1|2|A|464
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain s
- Transfer RNA; tRNA
- Chain x
- Elongation factor 1-alpha 1
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