3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AU*AAU
Length
5 nucleotides
Bulged bases
8Z70|1|2|A|506
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_027 not in the Motif Atlas
Homologous match to IL_8P9A_399
Geometric discrepancy: 0.5898
The information below is about IL_8P9A_399
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

8Z70|1|2|A|481
8Z70|1|2|U|482
*
8Z70|1|2|A|505
8Z70|1|2|A|506
8Z70|1|2|U|507

Current chains

Chain 2
18S rRNA

Nearby chains

Chain Sg
Small ribosomal subunit protein eS30A

Coloring options:


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