IL_8Z70_035

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8Z70|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_035 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1504

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8Z70|1|2|G|616
8Z70|1|2|U|617
8Z70|1|2|U|618
8Z70|1|2|A|619
8Z70|1|2|A|620
8Z70|1|2|A|621
8Z70|1|2|A|622
*
8Z70|1|2|U|1104
8Z70|1|2|C|1105

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A

Chain Se

Small ribosomal subunit protein eS26A