IL_8Z70_045

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8Z70|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_045 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3525

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8Z70|1|2|G|868
8Z70|1|2|A|869
*
8Z70|1|2|U|958
8Z70|1|2|U|959
8Z70|1|2|U|960

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Sf

Small ribosomal subunit protein eS27A