IL_8Z70_049

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8Z70|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_049 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.239

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8Z70|1|2|U|893
8Z70|1|2|U|894
8Z70|1|2|G|895
8Z70|1|2|U|896
8Z70|1|2|C|897
8Z70|1|2|A|898
8Z70|1|2|G|899
*
8Z70|1|2|C|910
8Z70|1|2|U|911
8Z70|1|2|U|912
8Z70|1|2|G|913
8Z70|1|2|G|914
8Z70|1|2|A|915
8Z70|1|2|U|916
8Z70|1|2|U|917
8Z70|1|2|U|918
8Z70|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain SQ

Small ribosomal subunit protein eS1A

Chain SZ

Small ribosomal subunit protein uS11B