3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GA*UAC
Length
5 nucleotides
Bulged bases
8Z70|1|2|A|1631
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_056 not in the Motif Atlas
Homologous match to IL_8C3A_447
Geometric discrepancy: 0.1541
The information below is about IL_8C3A_447
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
112

Unit IDs

8Z70|1|2|G|1146
8Z70|1|2|A|1147
*
8Z70|1|2|U|1630
8Z70|1|2|A|1631
8Z70|1|2|C|1632

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SR
Small ribosomal subunit protein uS5
Chain Se
Small ribosomal subunit protein eS26A

Coloring options:


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