IL_8Z70_057

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

8Z70|1|2|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_057 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.1734

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

8Z70|1|2|G|1149
8Z70|1|2|G|1150
8Z70|1|2|A|1151
*
8Z70|1|2|U|1627
8Z70|1|2|U|1628

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Se

Small ribosomal subunit protein eS26A