IL_8Z70_068

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8Z70|1|2|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_068 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.2456

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8Z70|1|2|C|1280
8Z70|1|2|G|1281
*
8Z70|1|2|C|1426
8Z70|1|2|A|1427
8Z70|1|2|G|1428

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS3

Chain SF

Small ribosomal subunit protein uS9A

Chain SJ

Small ribosomal subunit protein uS10

Chain SM

Small ribosomal subunit protein uS14A

Chain SR

Small ribosomal subunit protein uS5

Chain s

Transfer RNA; tRNA