IL_8Z70_092

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_092 not in the Motif Atlas

Geometric match to IL_7MLW_006

Geometric discrepancy: 0.3133

The information below is about IL_7MLW_006

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8Z70|1|2|A|1693
8Z70|1|2|A|1694
8Z70|1|2|G|1695
*
8Z70|1|2|C|1706
8Z70|1|2|A|1707
8Z70|1|2|U|1708

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

Large ribosomal subunit protein eL24A