IL_8Z70_096
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAACUU*AUCAAUAA
- Length
- 15 nucleotides
- Bulged bases
- 8Z70|1|A|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z70_096 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.2447
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8Z70|1|A|U|32
8Z70|1|A|G|33
8Z70|1|A|A|34
8Z70|1|A|A|35
8Z70|1|A|C|36
8Z70|1|A|U|37
8Z70|1|A|U|38
*
8Z70|1|A|A|45
8Z70|1|A|U|46
8Z70|1|A|C|47
8Z70|1|A|A|48
8Z70|1|A|A|49
8Z70|1|A|U|50
8Z70|1|A|A|51
8Z70|1|A|A|52
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain c
- Large ribosomal subunit protein uL15
- Chain l
- Large ribosomal subunit protein eL37A
- Chain q
- Large ribosomal subunit protein eL42A
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