IL_8Z70_102

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

8Z70|1|A|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_102 not in the Motif Atlas

Geometric match to IL_5TBW_501

Geometric discrepancy: 0.3744

The information below is about IL_5TBW_501

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8Z70|1|A|U|177
8Z70|1|A|U|178
*
8Z70|1|A|A|238
8Z70|1|A|G|239
8Z70|1|A|U|240
8Z70|1|A|G|241

Current chains

Chain A

25S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein eL13A

Chain j

Large ribosomal subunit protein uL29A

Chain l

Large ribosomal subunit protein eL37A