IL_8Z70_113

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_113 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.185

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Z70|1|A|C|758
8Z70|1|A|U|759
8Z70|1|A|G|760
8Z70|1|A|A|761
8Z70|1|A|U|762
8Z70|1|A|G|763
*
8Z70|1|A|C|768
8Z70|1|A|G|769
8Z70|1|A|G|770
8Z70|1|A|A|771
8Z70|1|A|U|772
8Z70|1|A|G|773

Current chains

Chain A

25S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein eL13A

Chain c

Large ribosomal subunit protein uL15

Chain q

Large ribosomal subunit protein eL42A