3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUA*UU
Length
5 nucleotides
Bulged bases
8Z70|1|A|U|1181
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_135 not in the Motif Atlas
Homologous match to IL_8P9A_278
Geometric discrepancy: 0.1775
The information below is about IL_8P9A_278
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

8Z70|1|A|A|1180
8Z70|1|A|U|1181
8Z70|1|A|A|1182
*
8Z70|1|A|U|1324
8Z70|1|A|U|1325

Current chains

Chain A
25S rRNA

Nearby chains

Chain I
Large ribosomal subunit protein uL30A
Chain O
Large ribosomal subunit protein eL14A
Chain Q
Large ribosomal subunit protein uL13A
Chain U
Large ribosomal subunit protein eL20A
Chain h
Large ribosomal subunit protein eL33A

Coloring options:


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