3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
8Z70|1|A|G|2335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_160 not in the Motif Atlas
Geometric match to IL_8C3A_484
Geometric discrepancy: 0.1899
The information below is about IL_8C3A_484
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.2
Basepair signature
cWW-cWW-L-cWW-L-R-L-R-L-L
Number of instances in this motif group
3

Unit IDs

8Z70|1|A|G|1898
8Z70|1|A|G|1899
8Z70|1|A|A|1900
8Z70|1|A|A|1901
8Z70|1|A|G|1902
8Z70|1|A|U|1903
8Z70|1|A|C|1904
8Z70|1|A|G|1905
8Z70|1|A|G|1906
*
8Z70|1|A|C|2333
8Z70|1|A|U|2334
8Z70|1|A|G|2335
8Z70|1|A|U|2336
8Z70|1|A|C|2337

Current chains

Chain A
25S rRNA

Nearby chains

Chain E
Large ribosomal subunit protein uL3
Chain X
Large ribosomal subunit protein uL14A

Coloring options:


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