IL_8Z70_170

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8Z70|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_170 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.3465

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8Z70|1|A|G|2206
8Z70|1|A|A|2207
8Z70|1|A|A|2208
8Z70|1|A|U|2209
8Z70|1|A|G|2210
*
8Z70|1|A|C|2235
8Z70|1|A|G|2236
8Z70|1|A|C|2237

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain D

Large ribosomal subunit protein uL2A

Chain SQ

Small ribosomal subunit protein eS1A