IL_8Z70_184
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- 8Z70|1|A|A|2626
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z70_184 not in the Motif Atlas
- Homologous match to IL_8P9A_325
- Geometric discrepancy: 0.1819
- The information below is about IL_8P9A_325
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 130
Unit IDs
8Z70|1|A|G|2614
8Z70|1|A|G|2615
*
8Z70|1|A|C|2625
8Z70|1|A|A|2626
8Z70|1|A|C|2627
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL16
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL42A
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