3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUCC*GC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_187 not in the Motif Atlas
Homologous match to IL_8C3A_110
Geometric discrepancy: 0.3042
The information below is about IL_8C3A_110
Detailed Annotation
Single stack bend with bulge
Broad Annotation
Single stack bend with bulge
Motif group
IL_39137.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

8Z70|1|A|G|2770
8Z70|1|A|U|2771
8Z70|1|A|C|2772
8Z70|1|A|C|2773
*
8Z70|1|A|G|2787
8Z70|1|A|C|2788

Current chains

Chain A
25S rRNA

Nearby chains

Chain N
Large ribosomal subunit protein eL13A
Chain S
Large ribosomal subunit protein eL18A
Chain c
Large ribosomal subunit protein uL15
Chain q
Large ribosomal subunit protein eL42A

Coloring options:


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