IL_8Z70_209

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8Z70|1|A|A|3178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_209 not in the Motif Atlas

Homologous match to IL_8P9A_351

Geometric discrepancy: 0.1896

The information below is about IL_8P9A_351

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8Z70|1|A|G|3177
8Z70|1|A|A|3178
8Z70|1|A|U|3179
*
8Z70|1|A|A|3210
8Z70|1|A|C|3211

Current chains

Chain A

25S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein eL6B

Chain O

Large ribosomal subunit protein eL14A

Chain Q

Large ribosomal subunit protein uL13A

Chain U

Large ribosomal subunit protein eL20A

Chain h

Large ribosomal subunit protein eL33A