IL_8Z70_234

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_234 not in the Motif Atlas

Homologous match to IL_8CRE_034

Geometric discrepancy: 0.2117

The information below is about IL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8Z70|1|A|G|869
8Z70|1|A|G|870
8Z70|1|A|U|871
8Z70|1|A|U|872
*
8Z70|1|A|A|888
8Z70|1|A|U|889
8Z70|1|A|C|890

Current chains

Chain A

25S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein eL37A