IL_8Z71_020
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z71_020 not in the Motif Atlas
- Homologous match to IL_8C3A_411
- Geometric discrepancy: 0.1844
- The information below is about IL_8C3A_411
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71854.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8Z71|1|2|U|318
8Z71|1|2|U|319
8Z71|1|2|U|320
8Z71|1|2|C|321
8Z71|1|2|G|322
8Z71|1|2|A|323
*
8Z71|1|2|U|345
8Z71|1|2|G|346
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain T
- Large ribosomal subunit protein eL19A
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