IL_8Z71_049

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8Z71|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z71_049 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.239

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8Z71|1|2|U|893
8Z71|1|2|U|894
8Z71|1|2|G|895
8Z71|1|2|U|896
8Z71|1|2|C|897
8Z71|1|2|A|898
8Z71|1|2|G|899
*
8Z71|1|2|C|910
8Z71|1|2|U|911
8Z71|1|2|U|912
8Z71|1|2|G|913
8Z71|1|2|G|914
8Z71|1|2|A|915
8Z71|1|2|U|916
8Z71|1|2|U|917
8Z71|1|2|U|918
8Z71|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain SQ

Small ribosomal subunit protein eS1A

Chain SZ

Small ribosomal subunit protein uS11B